| Protein ZmOrphan12 | |
|---|---|
|
ZmOrphan12 is a protein in the Orphans family.
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| Information | |
| Orphans Name: | ZmOrphan12 |
| Species: | Maize |
| Orphans Family: | Orphans |
| Gene Name(Synonym): | |
| Uniprot ID: | C0PF57 |
| Subgenome: | 1 |
Protein ZmOrphan12
ZmOrphan12 is a protein in the Orphans family.
| Overview of domains present in v5 transcripts | |
|---|---|
| PF08879 | |
| Zm00001eb378820_T001 |  |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d045533 | DAPseq |  |
sequence | fimo | position |
| Zm00001d045533 | DAPseq |  |
sequence | fimo | position |
| Zm00001d045533 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d045533 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmOrphan12 is the regulator
Interactions where ZmOrphan12 is the target
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Zm00001eb378820_T001 from maize genome v5
Amino Acid Sequence
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MAGVPVPPDLLRPAPHAAAFSFASPAASPFYHHHHHHPSLSYYAYYGKKLDPEPWRCRRTDGKKWRCSKEAHPDSKYCER
HMHRGRNRSRKPVESKTASSPPQLSTVVTTTTTREAAAATPLESLAGAGGKAHGLSLGGGAGSSHLSVDASNAHFRYGSK
YPLGAKSDAGELSFFSGAPGNSRGFTIDSPADNSWHSLPSNVPPFTLSKGRDSGLLPGAYSYSHIEPPQVLGQVTIASLS
QDQERHQSSFSSGGAGAGGLLGSVKQENQPLRPFFDEWPGTRDSWSEMDDARSSRTSFSTTQLSISIPMPRCD
MAGVPVPPDLLRPAPHAAAFSFASPAASPFYHHHHHHPSLSYYAYYGKKLDPEPWRCRRTDGKKWRCSKEAHPDSKYCER
HMHRGRNRSRKPVESKTASSPPQLSTVVTTTTTREAAAATPLESLAGAGGKAHGLSLGGGAGSSHLSVDASNAHFRYGSK
YPLGAKSDAGELSFFSGAPGNSRGFTIDSPADNSWHSLPSNVPPFTLSKGRDSGLLPGAYSYSHIEPPQVLGQVTIASLS
QDQERHQSSFSSGGAGAGGLLGSVKQENQPLRPFFDEWPGTRDSWSEMDDARSSRTSFSTTQLSISIPMPRCD
MAGVPVPPDLLRPAPHAAAFSFASPAASPFYHHHHHHPSLSYYAYYGKKLDPEPWRCRRTDGKKWRCSKEAHPDSKYCER
HMHRGRNRSRKPVESKTASSPPQLSTVVTTTTTREAAAATPLESLAGAGGKAHGLSLGGGAGSSHLSVDASNAHFRYGSK
YPLGAKSDAGELSFFSGAPGNSRGFTIDSPADNSWHSLPSNVPPFTLSKGRDSGLLPGAYSYSHIEPPQVLGQVTIASLS
QDQERHQSSFSSGGAGAGGLLGSVKQENQPLRPFFDEWPGTRDSWSEMDDARSSRTSFSTTQLSISIPMPRCD
MAGVPVPPDLLRPAPHAAAFSFASPAASPFYHHHHHHPSLSYYAYYGKKLDPEPWRCRRTDGKKWRCSKEAHPDSKYCER
HMHRGRNRSRKPVESKTASSPPQLSTVVTTTTTREAAAATPLESLAGAGGKAHGLSLGGGAGSSHLSVDASNAHFRYGSK
YPLGAKSDAGELSFFSGAPGNSRGFTIDSPADNSWHSLPSNVPPFTLSKGRDSGLLPGAYSYSHIEPPQVLGQVTIASLS
QDQERHQSSFSSGGAGAGGLLGSVKQENQPLRPFFDEWPGTRDSWSEMDDARSSRTSFSTTQLSISIPMPRCD
MAGVPVPPDLLRPAPHAAAFSFASPAASPFYHHHHHHPSLSYYAYYGKKLDPEPWRCRRTDGKKWRCSKEAHPDSKYCER
HMHRGRNRSRKPVESKTASSPPQLSTVVTTTTTREAAAATPLESLAGAGGKAHGLSLGGGAGSSHLSVDASNAHFRYGSK
YPLGAKSDAGELSFFSGAPGNSRGFTIDSPADNSWHSLPSNVPPFTLSKGRDSGLLPGAYSYSHIEPPQVLGQVTIASLS
QDQERHQSSFSSGGAGAGGLLGSVKQENQPLRPFFDEWPGTRDSWSEMDDARSSRTSFSTTQLSISIPMPRCD
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF08879 |
|
| Hover here to show all domains | |
Nucleotide Sequence
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AACCCCCACCTGACCTTCTCTTCCT...
AACCCCCACCTGACCTTCTCTTCCTCCCTCCCCCGACCGCCTGTCTGTCCTCCGCGCATCCGTTCTCTATCGAAAGGGAGGAGGAGGAGCGCGCGGGAGTGGGCTGGGGGCCCACCGATGCTGAGCTCGGCGTCCTCGGCCGGGGCGGCCATGGGGATGGGCGGCGGGTACCAACACCAGCCGCTGCCACTGCCGCAGCGCGGGGCGGCGGCCGCGGTCTTCACCGCCGCGCAGTGGGCGGAGCTGGAGCAGCAGGCGCTCATCTACAAGTACCTCATGGCCGGCGTCCCCGTCCCGCCCGATCTCCTCCGCCCCGCCCCCCACGCCGCCGCCTTCTCCTTCGCCAGCCCCGCCGCGTCGCCCTTCTACCATCACCACCACCACCACCCGTCCCTGAGTTACTACGCCTACTACGGGAAGAAGCTGGACCCGGAGCCGTGGCGGTGCCGCCGCACCGACGGCAAGAAGTGGCGGTGCTCCAAGGAGGCGCACCCCGACTCCAAGTACTGCGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCCAAGACCGCCTCCTCGCCGCCCCAGCTGTCCACCGTCGTCACCACCACCACCACCCGGGAGGCCGCCGCCGCGACGCCCCTTGAGTCCCTCGCGGGGGCGGGGGGTAAGGCTCACGGCCTGTCCCTCGGCGGCGGGGCTGGCTCGTCGCACCTCAGCGTCGACGCTTCGAACGCTCACTTTCGCTATGGCAGCAAGTACCCTCTTGGAGCTAAATCCGATGCTGGCGAGCTGAGCTTCTTCTCAGGAGCACCAGGGAACTCCAGGGGCTTCACCATTGATTCTCCAGCAGATAACTCTTGGCACTCCCTGCCATCCAACGTGCCCCCGTTTACACTGTCCAAGGGCAGAGACTCTGGCCTCCTGCCCGGTGCCTACTCCTACTCCCACATTGAACCACCGCAGGTGCTCGGCCAGGTCACCATCGCCTCGCTGTCACAGGACCAGGAGCGCCACCAGTCGTCGTTCAGCAGCGGCGGGGCCGGCGCTGGTGGATTGCTGGGGAGCGTGAAGCAGGAGAACCAGCCGCTGAGGCCCTTCTTCGACGAGTGGCCTGGGACGCGGGACTCGTGGTCGGAGATGGACGACGCGAGGTCCAGTAGGACCTCCTTCTCGACGACCCAGCTCTCCATCTCCATTCCGATGCCCAGATGTGATTGAGAACGAAGCTCGTGCGCGGCCAGTAGGTGGCGTTGTCGCATGACGCGCACCCAGCATCGCGCTCGCTGCTAGCGAGCCACCGTCACCCGGTGATTGATGCCCTCATCCTAGCTATTTGTTTCGCTGAATCGCATTAAGAACAGAACTCTATGTAAGAGCAGGATCCTTCCTCATGTATCAATGGGGGCAATGAACTCCATTCTGTTTCTATGGTTGTAGTACCGACCATGCTTTGTATTTGTTGTACCCAGACCGAGAATGAAAACCGCCCAGTCGTCAGGCGTTGTCGTCGCTGCATCAGATGATCCAAGTGTATTGTGTGCTTTCCAGGCTGTGTAAGATCTGATGGCGAATCTGTTACTGCAGTGTAGGTGTGTAGCATCTGTGGTATGGTACCTTTTGTTGTGCTACTGGATCTGGATTGATGCAAAATCTGGTGCTGCCGTAGGCCCCTCTTCCTTTTCTCTACTGCTATAATAATAATACATCTTTTTTTTATGATAGGAAAAGAAATGAGAAGAACAG
GRMZM2G119359_T01 from maize genome v3
Amino Acid Sequence
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MHRGRNRSRKPVESKTASSPPQLSTVVTTTTTREAAAATPLESLAGAGGKAHGLSLGGGAGSSHLSVDASNAHFRYGSKY
PLGAKSDAGELSFFSGAPGNSRGFTIDSPADNSWHSLPSNVPPFTLSKGRDSGLLPGAYSYSHIEPPQVLGQVTIASLSQ
DQERHQSSFSSGGAGAGGLLGSVKQENQPLRPFFDEWPGTRDSWSEMDDARSSRTSFSTTQLSISIPMPRCD
Nucleotide Sequence
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AACCCCCACCTGACCTTCTCTTCCT...
AACCCCCACCTGACCTTCTCTTCCTCCCTCCCCCGACCGCCTGTCTGTCCTCCGCGCATCCGTTCTCTATCGAAAGGGAGGAGGAGGAGCGCGCGGGAGTGGGCTGGGGGCCCACCGATGCTGAGCTCGGCGTCCTCGGCCGGGGCGGCCATGGGGATGGGCGGCGGGTACCAACACCAGCCGCTGCCACTGCCGCAGCGCGGGGCGGCGGCCGCGGTCTTCACCGCCGCGCAGTGGGCGGAGCTGGAGCAGCAGGCGCTCATCTACAAGTACCTCATGGCCGGCGTCCCCGTCCCGCCCGATATCCTCCGCCCCGCCCCCCACGCCGCCGCCTTCTCCTTCGCCAGCCCCGCCGCGTCGCCCTTCTACTTTCCCCCACCACCACCCGTCCCTGAGTTACTACGCCTACTACGGGAAGAAGCTGGACCCGGAGCCGTGGCGGTGCCGCCGCACCGACGGCAAGAAGTGGCGGTGCTCCAAGGAGGCGCACCCCGACTCCAAGTACTGCGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCCAAGACCGCCTCCTCGCCGCCCCAGCTGTCCACCGTCGTCACCACCACCACCACCCGGGAGGCCGCCGCCGCGACGCCCCTTGAGTCCCTCGCGGGGGCGGGGGGTAAGGCTCACGGCCTGTCCCTCGGCGGCGGGGCTGGCTCGTCGCACCTCAGCGTCGACGCTTCGAACGCTCACTTTCGCTATGGCAGCAAGTACCCTCTTGGAGCTAAATCCGATGCTGGCGAGCTGAGCTTCTTCTCAGGAGCACCAGGGAACTCCAGGGGCTTCACCATTGATTCTCCAGCAGATAACTCTTGGCACTCCCTGCCATCCAACGTGCCCCCGTTTACACTGTCCAAGGGCAGAGACTCTGGCCTCCTGCCCGGTGCCTACTCCTACTCCCACATTGAACCACCGCAGGTGCTCGGCCAGGTCACCATCGCCTCGCTGTCACAGGACCAGGAGCGCCACCAGTCGTCGTTCAGCAGCGGCGGGGCCGGCGCTGGTGGATTGCTGGGGAGCGTGAAGCAGGAGAACCAGCCGCTGAGGCCCTTCTTCGACGAGTGGCCTGGGACGCGGGACTCGTGGTCGGAGATGGACGACGCGAGGTCCAGTAGGACCTCCTTCTCGACGACCCAGCTCTCCATCTCCATTCCGATGCCCAGATGTGATTGAGAACGAAGCTCGTGCGCGGCCAGTAGGTGGCGTTGTCGCATGACGCGCACCCAGCATCGCGCTCGCTGCTAGCGAGCCACCGTCACCCGGTGATTGATGCCCTCATCCTAGCTATTTGTTTCGCTGAATCGCATTAAGAACAGAACTCTATGTAAGAGCAGGATCCTTCCTCATGTATCAATGGGGGCAATGAACTCCATTCTGTTTCTATGGTTGTAGTACCGACCATGCTTTGTATTTGTTGTACCCAGACCGAGAATGAAAACCGCCCAGTCGTCAGGCGTTGTCGTCGCTGCATCAGATGATCCAAGTGTATTGTGTGCTTTCCAGGCTGTGTAAGATCTGATGGCGAATCTGTTACTGCAGTGTAGGTGTGTAGCATCTGTGGTATGGTACCTTTTGTTGTGCTACTGGATCTGGATTGATGCAAAATCTGGTGCTGCCGTAGGCCCCTCTTCCTTTTCTCTACTGCTATAATAATAATACATCTTTTTTTTATGATAGGAAAAGAAATGAGAAGAACAG
GRMZM2G119359_T02 from maize genome v3
Amino Acid Sequence
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MVCFPSAVSYYAYYGKKLDPEPWRCRRTDGKKWRCSKEAHPDSKYCERH
Nucleotide Sequence
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AACCCCCACCTGACCTTCTCTTCCT...
AACCCCCACCTGACCTTCTCTTCCTCCCTCCCCCGACCGCCTGTCTGTCCTCCGCGCATCCGTTCTCTATCGAAAGGGAGGAGGAGGAGCGCGCGGGAGTGGGCTGGGGGCCCACCGATGCTGAGCTCGGCGTCCTCGGCCGGGGCGGCCATGGGGATGGGCGGCGGGTACCAACACCAGCCGCTGCCACTGCCGCAGCGCGGGGCGGCGGCCGCGGTCTTCACCGCCGCGCAGTGGGCGGAGCTGGAGCAGCAGGCGCTCATCTACAAGTACCTCATGGCCGGCGTCCCCGTCCCGCCCGATATCCTCCGCCCCGCCCCCCACGCCGCCGCCTTCTCCTTCGCCAGCCCCGCCGCGTCGCCCTTCTACTTTCCCCCACCACCACCCGTCCCGTAAGCTCCCCCCTTACCTCCATCCCCCTCTTTTTTTTTGTTCGGGAGAGAACAGTTGCATAGATCTTTTGCCCGCCATGCTTCTTACTGGGATTGGATTTGTCTGGTTGGGTATTGCCGCGATTTATCTCATCGAGTGATTCATTAAGCATGCGCTGCCTAGCATCTCGGCATCTGCCTAATGTTCGAGTGGGGTGGATCTTTGTCACCTCCTCACCCGCTTGCTCGCGCAATGGGATGGGGATTCTTTATTATTCAAACTTTTAAACAAAACAAAGTGGGAGAAAGCATCTTCGCATTGGGTTGGTCAAATGTTCATGTGCTTTTTGATCTGCCCCAGTAGCAAGTACACCATTTCATTATAATATATGTATATACTATGGTTTGTTTCCCTTCTGCAGTGAGTTACTACGCCTACTACGGGAAGAAGCTGGACCCGGAGCCGTGGCGGTGCCGCCGCACCGACGGCAAGAAGTGGCGGTGCTCCAAGGAGGCGCACCCCGACTCCAAGTACTGCGAGCGCCAC
Zm00001d045533_T001 from maize genome v4
Amino Acid Sequence
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MLSSASSAGAAMGMGGGYQHQPLPLPQRGAAAAVFTAAQWAELEQQALIYKYLMAGVPVPPDLLRPAPHAAAFSFASPAA
SPFYHHHHHHPSLSYYAYYGKKLDPEPWRCRRTDGKKWRCSKEAHPDSKYCERHMHRGRNRSRKPVESKTASSPPQLSTV
VTTTTTREAAAATPLESLAGAGGKAHGLSLGGGAGSSHLSVDASNAHFRYGSKYPLGAKSDAGELSFFSGAPGNSRGFTI
DSPADNSWHSLPSNVPPFTLSKGRDSGLLPGAYSYSHIEPPQVLGQVTIASLSQDQERHQSSFSSGGAGAGGLLGSVKQE
NQPLRPFFDEWPGTRDSWSEMDDARSSRTSFSTTQLSISIPMPRCD
Nucleotide Sequence
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AACCCCCACCTGACCTTCTCTTCCT...
AACCCCCACCTGACCTTCTCTTCCTCCCTCCCCCGACCGCCTGTCTGTCCTCCGCGCATCCGTTCTCTATCGAAAGGGAGGAGGAGGAGCGCGCGGGAGTGGGCTGGGGGCCCACCGATGCTGAGCTCGGCGTCCTCGGCCGGGGCGGCCATGGGGATGGGCGGCGGGTACCAACACCAGCCGCTGCCACTGCCGCAGCGCGGGGCGGCGGCCGCGGTCTTCACCGCCGCGCAGTGGGCGGAGCTGGAGCAGCAGGCGCTCATCTACAAGTACCTCATGGCCGGCGTCCCCGTCCCGCCCGATCTCCTCCGCCCCGCCCCCCACGCCGCCGCCTTCTCCTTCGCCAGCCCCGCCGCGTCGCCCTTCTACCATCACCACCACCACCACCCGTCCCTGAGTTACTACGCCTACTACGGGAAGAAGCTGGACCCGGAGCCGTGGCGGTGCCGCCGCACCGACGGCAAGAAGTGGCGGTGCTCCAAGGAGGCGCACCCCGACTCCAAGTACTGCGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCCAAGACCGCCTCCTCGCCGCCCCAGCTGTCCACCGTCGTCACCACCACCACCACCCGGGAGGCCGCCGCCGCGACGCCCCTTGAGTCCCTCGCGGGGGCGGGGGGTAAGGCTCACGGCCTGTCCCTCGGCGGCGGGGCTGGCTCGTCGCACCTCAGCGTCGACGCTTCGAACGCTCACTTTCGCTATGGCAGCAAGTACCCTCTTGGAGCTAAATCCGATGCTGGCGAGCTGAGCTTCTTCTCAGGAGCACCAGGGAACTCCAGGGGCTTCACCATTGATTCTCCAGCAGATAACTCTTGGCACTCCCTGCCATCCAACGTGCCCCCGTTTACACTGTCCAAGGGCAGAGACTCTGGCCTCCTGCCCGGTGCCTACTCCTACTCCCACATTGAACCACCGCAGGTGCTCGGCCAGGTCACCATCGCCTCGCTGTCACAGGACCAGGAGCGCCACCAGTCGTCGTTCAGCAGCGGCGGGGCCGGCGCTGGTGGATTGCTGGGGAGCGTGAAGCAGGAGAACCAGCCGCTGAGGCCCTTCTTCGACGAGTGGCCTGGGACGCGGGACTCGTGGTCGGAGATGGACGACGCGAGGTCCAGTAGGACCTCCTTCTCGACGACCCAGCTCTCCATCTCCATTCCGATGCCCAGATGTGATTGAGAACGAAGCTCGTGCGCGGCCAGTAGGTGGCGTTGTCGCATGACGCGCACCCAGCATCGCGCTCGCTGCTAGCGAGCCACCGTCACCCGGTGATTGATGCCCTCATCCTAGCTATTTGTTTCGCTGAATCGCATTAAGAACAGAACTCTATGTAAGAGCAGGATCCTTCCTCATGTATCAATGGGGGCAATGAACTCCATTCTGTTTCTATGGTTGTAGTACCGACCATGCTTTGTATTTGTTGTACCCAGACCGAGAATGAAAACCGCCCAGTCGTCAGGCGTTGTCGTCGCTGCATCAGATGATCCAAGTGTATTGTGTGCTTTCCAGGCTGTGTAAGATCTGATGGCGAATCTGTTACTGCAGTGTAGGTGTGTAGCATCTGTGGTATGGTACCTTTTGTTGTGCTACTGGATCTGGATTGATGCAAAATCTGGTGCTGCCGTAGGCCCCTCTTCCTTTTCTCTACTGCTATAATAATAATACATCTTTTTTTTATG
Zm00001eb378820_T002 from maize genome v5
Amino Acid Sequence
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YPLGAKSDAGELSFFSGAPGNSRGFTIDSPADNSWHSLPSNVPPFTLSKGRDSGLLPGAYSYSHIEPPQVLGQVTIASLS
QDQERHQSSFSSGGAGAGGLLGSVKQENQPLRPFFDEWPGTRDSWSEMDDARSSRTSFSTTQLSISIPMPRCD
Nucleotide Sequence
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GTACCCTCTTGGAGCTAAATCCGAT...
GTACCCTCTTGGAGCTAAATCCGATGCTGGCGAGCTGAGCTTCTTCTCAGGAGCACCAGGGAACTCCAGGGGCTTCACCATTGATTCTCCAGCAGATAACTCTTGGCACTCCCTGCCATCCAACGTGCCCCCGTTTACACTGTCCAAGGGCAGAGACTCTGGCCTCCTGCCCGGTGCCTACTCCTACTCCCACATTGAACCACCGCAGGTGCTCGGCCAGGTCACCATCGCCTCGCTGTCACAGGACCAGGAGCGCCACCAGTCGTCGTTCAGCAGCGGCGGGGCCGGCGCTGGTGGATTGCTGGGGAGCGTGAAGCAGGAGAACCAGCCGCTGAGGCCCTTCTTCGACGAGTGGCCTGGGACGCGGGACTCGTGGTCGGAGATGGACGACGCGAGGTCCAGTAGGACCTCCTTCTCGACGACCCAGCTCTCCATCTCCATTCCGATGCCCAGATGTGATTGAGAACGAAGCTCGTGCGCGGCCAGTAGGTGGCGTTGTCGCATGACGCGCACCCAGCATCGCGCTCGCTGCTAGCGAGCCACCGTCACCCGGTGATTGATGCCCTCATCCTAGCTATTTGTTTCGCTGAATCGCATTAAGAACAGAACTCTATACCGAGAATGAAAACCGCCCAGTCGTCAGGCGTTGTCGTCGCTGCA
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